Delicious Healthy Chocolate Chip Cookies with no gluten or dairy! These cookies have very little sugar, come together quickly in ONE bowl, and don’t require any “specialty” ingredients or trips to a local health foods store — you might already have everything needed in the pantry!

Try our Healthy Oatmeal Chocolate Chip Cookies, Healthy Chocolate Cookies, or Healthy Pumpkin Cookies next time!

Healthy Chocolate Chip cookies stacked on a plate

I had a few criteria for these cookies to come into existence:

  1. The ingredients needed to be normal — you shouldn’t have to go to a specialty health food store to be able to make these cookies. You may already have everything needed for this recipe in your pantry!
  2. The ingredients needed to be nutritionally sound — not just a couple of nutritious swaps. We’ve got oats, an egg, coconut oil, cinnamon, salt, and dark chocolate chips, all of which have great nutritional benefits. There is some sugar in this recipe, but a very small amount — in fact a fraction of what you’d find in typical chewy chocolate chip cookies!
  3. This recipe needed to be simple to execute and fast to whip together. Check! Only one bowl, a hand whisk, and a wooden spoon are needed to have freshly baked healthy chocolate chip cookies.

What To Expect From This Recipe

If you’re expecting this recipe to taste like regular chocolate chip cookies, I’ll tell you right here, this is not the recipe for you. There’s a reason loads of butter, tons of sugar, and even more chocolate make such a compellingly delicious treat. When you take all that out, you can still have delicious cookies, but they’re going to taste quite different. 

Texture-wise: These cookies are very crunchy with a sandy-like texture. Sandy textured cookies are made by using less sugar, less liquid, and higher fat content. We use coconut oil as the fat (with nutritional benefits) in this recipe. These cookies quickly disintegrate, practically melting away in your mouth in one bite. These cookies are drier than regular cookies — more of a crunchy cookie as opposed to soft and chewy.

Flavor-wise: Fresh out of the oven, these cookies taste like crumbly, chewy oat bites with pools of melted chocolate. If you love oats, you will enjoy these cookies. If you aren’t a big oat fan, once again, this is probably not the recipe for you! These also have a strong dark chocolate flavor from the dark chocolate chips. (Other chocolate can be used, but will reduce the health benefits of these cookies — more on this later.) Finally, these aren’t very sweet; most of the sweetness comes from the chocolate chips. If you’d like them to be slightly sweeter, the brown sugar can be increased.

I highly recommend topping the cookies with extra chocolate chips and a pinch of sea salt flakes for the perfect crunchy, salty, and sweet treat!

Process shots-- images of the oat flour being made

First off, what is oat flour?

These cookies use easily accessible old-fashioned or quick oats, blended into a flour-like consistency, avoiding the need for specialty flours. Steel-cut oats don’t work for this.

Making oat flour is simple and quick: just pulse oats in a food processor or blender until powdery, ensuring no whole oats remain for consistent texture and liquid absorption in the cookies.

Quick Tip

Make sure to measure the oats once they’ve been blended into a powder and not before. Gently pack the oats into the measuring cup and level the top off. It’s important to measure the oat flour correctly for the recipe to work properly.

Process shots-- images of the wet and dry ingredients being prepped for these Healthy Chocolate Chip Cookies

Other Ingredients in Healthy Chocolate Chip Cookies

Below are some notes about the ingredients in this recipe.

  • Oats. This ingredient is discussed more in-depth up above. Read up on the amazing benefits of oats and why we love them in this Healthy Chocolate Chip Cookie recipe.
  • Vanilla extract, salt, and cinnamon. All of these ingredients are important for the flavor of the cookies and add minimal additional calories. Cinnamon also boasts great health benefits, so why not throw it in these cookies?! If you aren’t a cinnamon fan, feel free to reduce the overall amount, but note that the flavor will also lack a bit with it left out or reduced.
  • Egg. The egg is important for binding and giving these cookies rise. Eggs are a great healthful ingredient to use — they have healthy fats and lots of protein!
  • Baking soda. This is important for the structure of the cookies; be sure to use fresh baking soda.

Process shots-- images of the chocolate chips being added to the dough

Other Ingredients in Healthy Chocolate Chip Cookies, Continued

  • Coconut oil. This oil is linked to myriad health benefits and is integral to the cookie flavor and texture. Two important things to note when using this ingredient: measure it in its liquid state and let it fully cool to room temperature before adding it to the cookies. This recipe relies on coconut oil; other oils won’t work the same.
  • Brown sugar (or coconut sugar). Not a nutritious ingredient, but these cookies do need a little sweetness. We’re using a mere 4-6 tablespoons which is a fraction of the 2 (or more) cups you’ll find in a regular cookie recipe. This recipe does work with coconut sugar if you’d prefer to use unrefined sugar.
  • Dark chocolate chips. Why dark chocolate as opposed to milk or semi-sweet? Dark chocolate is known for its high antioxidant and mineral content, and is a great source of healthy fats; read up on the benefits of dark chocolate here. Any type of chocolate chips will work in this recipe, it will just be slightly less nutritious with milk or semi-sweet chips. Read the ingredient labels for dark chocolate chips; many contain milk fat, non-fat milk, or sugar, and if you’re sensitive, they could be an issue.

Process shots-- images of the cookie dough on a tray and then cookies fresh out of the oven

How To Make Healthy Chocolate Chip Cookies

  1. Melt Coconut Oil: Microwave the coconut oil until liquid, measure ½ cup once melted, and cool to room temperature.
  2. Blend Oats: Turn regular oats into oat flour using a blender, measuring 1½ cups after blending. Blend oats thoroughly to a fine powder for a smooth cookie texture.
  3. Mix Wet Ingredients: In a bowl, whisk together the cooled coconut oil, vanilla extract, egg, and brown sugar until smooth.
  4. Combine with Dry Ingredients: Stir in oat flour, baking soda, cinnamon, and salt, then fold in the dark chocolate chips. Mix until just combined to avoid overworking the dough, which can affect the texture of the cookies.
  5. Chill Dough: Cover and chill the dough for 20-30 minutes, then form into balls and flatten slightly. Don’t chill for longer than 30 minutes to make the dough easier to shape.
  6. Bake: Place the dough balls on a lined sheet pan, 2 inches apart, and bake at 350°F for 7-9 minutes. Slightly underbake for a better flavor and texture; they should be soft and gooey in the center.
  7. Cool and Serve: Let the cookies cool on the pan for 5 minutes, then transfer to a cooling rack. Optionally, press extra chocolate chips into the tops while warm. Handle the cookies gently as they can be quite delicate when hot.
  • Measure carefully. This recipe is very precise (as most baking is). It’s quick to make, but be precise in measuring everything fully and leveled to the top. To level the tops, sweep a metal spatula or the flat side of a knife across the top of the measuring cup.
  • Follow the recipe. Even tried-and-true substitutions (flax egg for regular egg, vegetable oil for coconut oil, or almond flour for oat flour) don’t work the same in these cookies — this recipe is fairly particular.
  • Make gluten-free Healthy Chocolate Chip Cookies. While the ingredients in these bars are naturally gluten-free, make sure to check all the ingredient labels to verify they weren’t processed in a facility with gluten.
  • Use room-temperature ingredients. It’s best if the egg is at room temperature and the melted coconut oil is at room temperature. This ensures even emulsification of ingredients instead of a cold egg seizing up warm or hot coconut oil.

Overhead image of two plates full of Healthy Chocolate Chip Cookies

  • Measure cookie dough balls precisely. Each cookie dough ball should be one tablespoon in size. Roll and then slightly flatten the cookie dough balls before baking.
  • Bake on a lined sheet pan. A silicone liner or parchment paper helps bake foods evenly without burning and allows the cookies to release from the pan and clean up effortlessly. Without the liner, we found the bottoms of the cookies crisped up more than we liked.
  • These cookies are very crumbly right out of the oven. Let them stand on the tray for a few minutes to firm up before carefully removing them with a metal spatula to a cooling rack. 
  • Handle delicately. Again, these cookies can be very crumbly and delicate. Move them carefully to avoid them breaking and crumbling apart.

Quick Tip

While this recipe is very simple to make, it’s also fairly particular. I recommend following the recipe closely and measuring carefully.

Up-close overhead image of the cookies on a plate

More nutritious treats to try

4.72 from 120 votes

Healthy Chocolate Chip Cookies

Delicious Healthy Chocolate Chip Cookies with no gluten or dairy. These cookies have very little sugar, come together quickly in one bowl, and don't require any specialty ingredients or trips to a local health foods store -- you probably already have everything needed in the pantry!
Prep Time: 20 minutes
Cook Time: 10 minutes
Chilling Time: 30 minutes
Total Time: 1 hour
Servings: 18 cookies

Equipment

  • Sheet pan and silicon liner or parchment paper

Ingredients  

  • 2 teaspoons (10g) vanilla extract
  • 1 large egg
  • 4 tablespoons (43g) (up to 6) dark brown sugar Note 1
  • ยฝ cup (111g) melted coconut oil Note 2
  • 1 ยฝ cups (160g) oat flour (regular oats blended in a blender -- See Note 3)
  • ยฝ teaspoon baking soda
  • 1 teaspoon ground cinnamon
  • ยฝ teaspoon fine sea salt Note 4
  • ยฝ cup (85g) dark chocolate chips Note 5
  • Optional: sea salt flakes & additional dark chocolate chips for topping cookies

Instructions 

  • MELT COCONUT OIL: Melt the coconut oil in the microwave until it is liquid. Measure a level ยฝ cup of oil once it's fully melted. Set aside to cool back to room temperature -- it should not be hot when adding to the recipe.
  • BLEND OATS: Add old-fashioned oats to a blender or food processor. Blend or process until the oats are fine and resemble flour, stirring and re-blending if needed so that ALL the oats are a fine powder. Measure the oat flour after blending and not before, to get a level and gently packed 1ยฝ cups of oat flour. Set aside.
  • WET INGREDIENTS: In a medium-sized bowl, combine the cooled coconut oil, vanilla extract, large egg, and brown sugar in a bowl. Briskly whisk everything together until completely smooth.
  • DRY INGREDIENTS: Add the oat flour, baking soda, cinnamon, and salt. Mix with a wooden spoon and stir until just combined; then stir in the dark chocolate chips.
  • CHILL: Cover the dough tightly and chill for 20-30 minutes. (Don't skip chilling, but don't chill longer than 30 minutes or the dough is almost impossible to shape!) Meanwhile, preheat the oven to 350 degrees F. Remove the dough and use a 1-tablespoon measuring spoon to portion out cookie dough balls. Tightly roll the balls and then slightly flatten. You should get 22-24 cookies from this dough. Place rolled-out balls on a parchment-paper-lined plate. Once rolled, chill all the cookie dough balls for another 10 minutes.
  • BAKE: Once chilled, transfer the cookie dough balls to a lined sheet pan, spacing them out 2 inches apart. Bake for 7-9 minutes (we think they're perfect at 8 minutes) or until no longer gooey on top. Slightly underbaking is best for flavor and texture. Carefully remove the tray from the oven. If desired, press a few more chocolate chips into the tops of the cookies. It makes them look pretty and ensures chocolate in every bite! Once those chips have melted a bit, add a sprinkle of sea salt onto the melted chocolate, if desired. Let the cookies stand on the sheet pan for 5 minutes. Then, very carefully, use a spatula to remove from the sheet pan to a cooling rack. Handle delicately-- these cookies are crumbly.
  • SERVING OR FREEZING LEFTOVER COOKIE DOUGH: Enjoy hot, warm, or at room temperature (we like them best right out of the oven!). Cookies are best the same day they're made -- they get harder and less sweet every day following. To freeze, I recommend freezing the unbaked cookie dough rather than baked cookies. Drop the cookie dough balls on a large sheet pan and freeze until solid. Once solid, transfer the frozen cookie dough balls to an airtight container or bag and freeze for up toย 3 months. To bake: Bake these cookies straight from the freezer. There is no need to thaw, but you may need to add an extra minute to bake time.

Recipe Notes

* While the ingredients in these cookies are naturally gluten-free, make sure to check all your ingredient labels to verify they werenโ€™t processed in a facility with gluten.
Note 1: Sugar: We love dark brown sugar, and light brown sugar will also work. Alternatively, use coconut sugar for non-refined sugar. If you aren't used to healthier treats, increase this amount to 5-6 tablespoons (we typically do 6 tablespoons). These cookies aren't overly sweet, since most of the sweetness comes from the chocolate chips. Lightly pack brown sugar in measuring cups when measuring.
Note 2: Coconut oil: I have found a good amount of variation in coconut oil brands; some brands leave a stronger coconut flavor in some brands than others. I personally use LouAna Coconut Oil. It is very important the oil is fully cooled to room temperature (if you touch it and don't feel a temperature, it's at room temperature) before adding to this recipe.
Note 3: Oats: Regular, old-fashioned oats or quick oats will work. Ensure the oats are completely and thoroughly blended to a powder before measuring. Gently pack in measuring cups and level off the top.
Note 4: Salt: Reduce to ยผ teaspoon if using table salt instead of fine sea salt -- these two salts aren't the same.
Note 5:ย Chocolate: Why dark chocolate as opposed to milk or semi-sweet? Dark chocolate is known for its high antioxidant and mineral content, and is a great source of healthy fats; read up on the benefits of dark chocolate here. Any type of chocolate chips will work in this recipe, it will just be slightly less nutritious with milk or semi-sweet chips. If you're highly sensitive to dairy, check the ingredient labels to be sure milk fat or non-fat milk aren't added.
A few quick tips:
  • Measure the ingredients exactly. As with most baked goods, loosely measuring may result in cookies that do not work out properly.
  • Even tried-and-true substitutions (flax egg for regular egg, vegetable oil for coconut oil, or almond flour for oat flour) donโ€™t work the same in these cookies โ€” this recipe is fairly particular.
  • Use room-temperature ingredients. It's best if the egg is at room temperature and the melted coconut oil is at room temperature, as well. This ensures even emulsification of ingredients instead of a cold egg seizing up warm or hot coconut oil.

Nutrition

Serving: 1serving | Calories: 188kcal | Carbohydrates: 20g | Protein: 4g | Fat: 11g | Saturated Fat: 8g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.001g | Cholesterol: 10mg | Sodium: 111mg | Potassium: 124mg | Fiber: 2g | Sugar: 6g | Vitamin A: 16IU | Vitamin C: 0.04mg | Calcium: 36mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

 

 

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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4.72 from 120 votes (12 ratings without comment)

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435 Comments

  1. Bria says:

    5 stars
    Made these this morning for the first time, and they were SO GOOD! I didn’t have baking soda, but I had baking powder so I substituted but tripled the amount. So instead of 1 tsp of baking soda, I used 3 tsp of baking powder. Cookies came out delicious! Great healthy recipe for when I’m craving unhealthy cookies. Thank you! I’m looking forward to trying more of your recipes ๐Ÿ™‚

    1. chelseamessyapron says:

      So, so happy these were so enjoyed! Thank you for the sweet compliments Bria! I hope you love whatever you try next! ๐Ÿ™‚

  2. Sheryl A says:

    5 stars
    Nom nom!! These cookies are so deelish! Awesome recipe. Brought them to a potluck and they were a HUGE hit! Thanks so much for sharing.

    1. chelseamessyapron says:

      YAY! So glad these were so enjoyed! Thank you so much for your comment! ๐Ÿ™‚

  3. Rosie says:

    How essential is the egg in this recipe because Im allergic to them ๐Ÿ™ is there a replacement I could maybe use or can I leave the egg out, will the recipe still work? Thanks

    1. chelseamessyapron says:

      I actually do think the egg is pretty essential unfortunately ๐Ÿ™ I’m not sure of any replacement without further recipe testing, but I certainly do know leaving it out wouldn’t work.

    2. Cindy says:

      5 stars
      Hi!
      I too can’t have eggs so I always substitute 1/4 cup homemade applesauce for 1 egg. I did that with this recipe and they turned out great. Now I say homemade because bought applesauce does not give me good results, I think it has too much water in it. I also only chilled them for half an hour my applesauce was cold so they the dough set up really fast. Very yummy! Thank you for sharing!

      Ps I only put 2 tblsp of the brown sugar as the applesauce will sweeten as well. I don’t put any added sugar in the applesauce just apples and water.

      1. chelseamessyapron says:

        Thanks so much for sharing your tips! So great to hear what works for substitutions so I (and I’m sure many others) appreciate it! ๐Ÿ™‚

  4. Felisha says:

    I have PCOS and i’ve been looking for cleaner eating options. This is a great, easy and truly delicious recipe. I have also been trying to go sugar free. I substituted the brown Sugar for 10 tbls of Truvia (I know that sounds like a lot) when I did a batch with just 4 tbls of truvia it tasted like cardboard. I also added 1 tbls of vanilla instead of 2 tsps and used sugar free chocolate chips. My 2 and 4 years old sons love them. Thanks a million so happy that I can still enjoy delicious cookies.

    1. chelseamessyapron says:

      That is so great to hear!! I’m so glad these have been enjoyed ๐Ÿ™‚ Thanks for the comment!

  5. Jessica says:

    I followed this recipe for the chocolate chip cookies, we didn’t love them. They were a bit ‘off’ tasting and dry. So I followed this recipe loosely for oatmeal cookies. I used 1/3c apple sauce in place of the egg, 1c ground oat , 1/2 c oats (texture), coconut manna in place of the coconut oil, and raisins in place of chocolate chips. Awesome treat ๐Ÿ™‚ thanks!

    1. chelseamessyapron says:

      Awesome!! So glad you were able to make a few changes to suit your personal tastes ๐Ÿ™‚ Thanks so much for the comment and trying these out! ๐Ÿ™‚

  6. Amanda says:

    Can the dough be chilled overnight or does it need to be just one hour? Thanks!

    1. chelseamessyapron says:

      It can be, they will be rock hard though and need to sit out a bit at room temperature ๐Ÿ™‚ I always have best success with just an hour of chilling.

  7. irene says:

    Hopefully I can get a response to this!

    We made these tonight. I didn’t “make” my own oat flour and I bought a pack from store that literally said “oat flour”. Is that still a “qualified” flour? I followed all the instructions (except maybe I did pack the oat flour a bit too tight in the measuring cups), and when I “chill” them in the fridge after 2 hours, they came out rock hard! I didn’t have time (it was almost my 4 year old’s bed time) so I “defrosted” it in the microwave for 30 seconds and yay it was sort of back to room temperature and soft. I was able to use my hand to mold 18 things and again follow instructions to bake for 9 minutes.

    So… while they tasted pretty good, I find it very very crumbly and powdery. I only tried one after it was freshly baked and I read it would be more “solid” if we let it down cool completely. However I saw my husband eating one after it was completely cooled, it also crumbled, not as bad but quite dry. Any thoughts or red flags you see?

    What is the point of chilling and why is my dough rock solid when I took it out of the fridge? Or should I have just left it sitting in room temperature for 1 hour? That was a bit confusing at first I thought you mean left in room temperature, but then later on I realize you said don’t let it “go back to room temperature” so I figured you mean we need to refrigerate it.

    Any advice would be most welcomed!

    1. chelseamessyapron says:

      Hi Irene! I’d love to help you! Perhaps you did pack in your oat flour too much getting a lot more than needed. I would measure it a lot looser next time. The store bought oat flour should work fine though. The other question, did you measure your coconut oil in the LIQUID state? When you add it too the cookies it should be liquid. I’m also wondering what kind of coconut oil you use? And yes the cookies aren’t soft and chewy like a typical butter/sugar laden cookie, but they should not crumble and be totally dry either. I would lessen the oat flour (not pack it in), and increase the coconut oil (or make sure that it is liquid). Then try chilling for just about 30-45 minutes and then cooking the cookies. Hope that helps. Please let me know any other questions you have!

  8. Faye says:

    5 stars
    Also I made them myself and loved them, I didn’t allow chill time Ito my first ever time making cookies and I somehow missed that part, but they still turned out amazing ? xxx thank you!

    1. chelseamessyapron says:

      So glad to hear they still worked out! ๐Ÿ™‚ Thanks for the comment, I’m glad you liked these!!

  9. Faye says:

    Can I just ask are the calories per cookie or per batch please?

    1. chelseamessyapron says:

      Per cookie ๐Ÿ™‚

  10. Nelvin says:

    I need some advise on this one.
    I tried the recipe to the dot and went with very exact measurements (ml) (basing on equivalents of the measurements here to what I find in the internet).

    It came out alright but I think it’s a bit too dry.

    Here are my measurements:
    10ml vanilla extract
    45ml large egg (removed excess egg white to become 45ml from ~55ml)
    60ml dark brown sugar, lightly packed
    125ml coconut oil
    343ml oat flour (regular oats blended)
    5ml baking soda
    5ml cinnamon
    Pinch of salt
    118ml dark chocolate chips

    Cooked in for 8 minutes in the oven at 350 degrees F.

    Thanks for the recipe!

    1. Nelvin says:

      In addition — this yielded around 28 cookies for me.

    2. chelseamessyapron says:

      So glad you enjoyed these cookies and I’m sure these measurements will be extremely helpful to readers, so thank you for sharing! ๐Ÿ™‚ Also, if you want to slightly reduce the oat flour or slightly increase the coconut oil, they should be less dry ๐Ÿ™‚