The ultimate BEST EVER edible cookie dough cups!! Completely food safe to eat (cooked flour and no raw eggs!) via chelseasmessyapron.com

These Cookie Dough Cups are made by loading edible cookie dough in a miniature muffin tin and covering it with melted chocolate — it ends up kind of like a Reese’s® Peanut Butter Cup but with cookie dough instead of PB! 

After you’ve fallen in love with these Cookie Dough Cups, try some of our other favorite treats — cereal S’mores Bars, Energy Bites, or these Muddy Buddies.

Cookie Dough Cups

My entire family loves Reese’s Peanut Butter Cups, but given the choice, they’d pick eating cookie dough over Reese’s any day. So I thought, why not combine two of their favorites? And now I’m definitely the favorite in the family for making these. ๐Ÿ˜‰

Cookie Dough Cups are delicious! A rich center of soft, chewy, flavorful cookie dough encased in a rich coating of chocolate? Yes, yes, and yes!

Plus, you don’t need any special candy-making equipment. For these sweet little cups, you’ll just need a miniature muffin tin and liners!

Tools Needed

As mentioned, there’s no special candy-making equipment required, but here’s what you will need:

  • Mini muffin pan
  • Miniature muffin liners

Process shots: making edible cookie dough

The center of these Cookie Dough Cups is edible cookie dough. What do I mean by edible? Well, technically, regular cookie dough (like you’d get in chewy chocolate chip cookies) is not food safe to eat. 

There are food safety concerns revolving around both the flour and uncooked eggs. So the edible cookie dough portion of these cookie dough cups is specially formulated to be safe while also tasting just like regular cookie dough. There are no eggs in this recipe and we heat treat the flour to ensure everything is up to safety standard for consumption.

What is heat treating flour?

A lot of people are surprised to find flour is responsible for sickness in unbaked cookie dough. While flour doesn’t look like raw food, it actually is. It may contain germs that can cause food poisoning.  When you bake with flour, the oven’s heat accomplishes that sterilization process, but uncooked foods don’t get heat-treated flour. So, we actually cook (heat treat) the flour before using it, to ensure we kill any potential bacteria. There are three options for heat-treating your flour.

I outline the full extent of these methods for heat-treating the flour in the recipe card, but here are a few quick tips when heating treating flour:

  • Let the flour cool completely before using it in the recipe; you can speed up the process by placing the tray in the fridge or freezer.
  • Break up any clumps of flour and discard any discolored sections — this part of the flour is burnt and will give the cookie dough an “off” flavor.
  • Heat treat more flour than you’ll need to compensate for any flour that gets burned in the process of heat treating.
  • Heat-treated flour should look just like regular flour (light, fluffy, and white).

Process shots: using cookie dough to make Cookie Dough Cups

Let’s chat chocolate

  • You can use any type of chocolate you like for these cookie dough cups — milk, semi-sweet, dark, or white chocolate chips. Our favorite is milk chocolate, but I have to admit, the Cookie Dough Cups end up very sweet. To limit sweetness, try semi-sweet or dark. 
  • For best flavor and melting results, use good-quality chocolate chips. Cookie Dough Cups aren’t nearly as tasty with cheaper chocolate.
  • Microwave the chocolate chips in sturdy, heat–safe bowls instead of using plastic or melamine. 
  • To avoid burned chocolate, microwave the chips for 30 seconds at a time, and stir them for at least 20-25 seconds between each microwave burst. Remember, the chocolate is still melting even after it has been removed from the microwave. 

Process shots: layering chocolate and cookie dough

  • Store in the fridge. Especially on a warm day, Cookie Dough Cups have a tendency to get melty. I like keeping them in the fridge until the last minute before serving. These taste best right out of the fridge!
  • Add some sea salt. If you love salty-sweet treats, top these cups with a light sprinkle of Maldon sea salt flakes — yum!
  • Tap the muffin tin on the counter. After adding chocolate to the base and then to top the cookie dough, give the muffin tin a few hard taps to help even out the chocolate and get it in one layer.
  • Don’t forget the liners. These cookie dough cups won’t come out very well without liners!

Cookie Dough Cups stacked on top of each other

You’ll end up with a bit of extra cookie dough after filling up 24 chocolate cups. You can certainly use it all up in more cookie dough cups (just melt more chocolate), but we love having extra to snack on while rolling or we like to have it on hand to enjoy in other ways. Here’s how we like to use leftover cookie dough:

More Chocolate Desserts

5 from 1 vote

Cookie Dough Cups

Cookie Dough Cups are sweet, chocolate-covered bites filled with creamy edible cookie dough, a fun twist on a classic treat!
Prep Time: 45 minutes
Cook Time: 10 minutes
Total Time: 55 minutes
Servings: 24 cups

Equipment

  • Miniature muffin pan with liners
  • small bowl microwave-safe

Ingredients 
 

Edible Cookie Dough

  • 3/4 cup flour
  • 1/3 cup unsalted butter melted
  • 1/3 cup dark brown sugar firmly packed
  • 3 tablespoons granulated sugar
  • 1/4 teaspoon salt
  • 1 teaspoon vanilla extract
  • 1 tablespoon whole milk or heavy cream
  • 1/3 cup miniature chocolate chips

Chocolate Coating

  • 2 cups chocolate chips divided, see note 1
  • 1-1/2 teaspoons coconut oil divided

Instructions 

  • Heat treat flour in the microwave or oven (see note 2). Let flour cool to room temperature before using. The flour should be light, white, and fluffy. If it's off colored or clumpy, it's burnt and shouldn't be used. Spoon the flour into a 3/4 measuring cup and level the top with a table knife. Set aside.
  • Melt butter and set it aside to cool back to room temperatureโ€”hot butter will melt the sugar and cause greasy or grainy cookie dough. In a medium-sized bowl, whisk together butter and both sugars until the mixture is fully integrated and smooth.
  • Add in the salt, vanilla, and milk or cream and stir until integrated. Stir in the flour and miniature chocolate chips. Mix until combined and smooth. Place the cookie dough in the fridge for 10 minutes.
  • Roll the cookie dough into small balls (1/2 tablespoon). Slightly flatten the balls into thick discs. You should get about 36 cookie dough discs, but we only need 24 for this recipe so either eat the rest or enjoy them as a topping for another treat.
  • Line a miniature muffin pan; we need a total of 24 cups lined.
  • In a small microwave-safe bowl melt 3/4 cup chocolate chips with 1/2 teaspoon coconut oil (see note 3). Spoon an even amount of the melted chocolate mixture into the bottom of each muffin cup, using it all among the 24 cups. Gently tap the miniature muffin pan a few times to get the chocolate in an even layer on the bottom.
  • Place the disks of cookie dough on top of the melted chocolate mixture in each cup. In the same bowl melt another 1-1/4 cup of chocolate and 1 teaspoon coconut oil.
  • Pour an even amount of chocolate over each of the cookie dough cups. Be sure that all the chocolate is used, and fill the cookie dough cups most of the way to the top. Gently tap the muffin pan on the counter a few times to get an even chocolate coating.
  • Chill in the fridge for at least 30 minutes or until set, then enjoy!

Recipe Notes

Note 1:ย I love milk chocolate best, but semi-sweet or dark chocolate work here too -- use whichever you prefer.ย 
Note 2: Uncooked flour carries a risk of dangerous bacteria. While you don't have to heat treat the flour, I recommend it to ensure this recipe is food safe. Here's how to do it in either the microwave or oven:
Heat treat it in the microwave: Add the flour to a microwave-safe bowl. I recommend heat treating more than the recipe calls for (1/2 to 1 cup extra) just to ensure you have enough. Microwave on high in bursts of 30 seconds, stirring in between each burst. Take your time and stir well to make sure none of the flour burns or clumps. Use a thermometer to test the flour in a few places to make sure it has reached 165ยฐF throughout all the flour.ย 
Heat treat it in the oven: Preheat the oven to 300ยฐF. Line a large sheet pan (with sides) with a nonstick liner or parchment paper. Spread the flour on the pan (treat more than you'll use; 1/2 to 1 cup extra). As you bake the flour, remove and stir it, every 1.5 minutes. Every time you remove the flour to stir, test it with the thermometer. As soon as it reaches 165ยฐF, it's safe. This takes about 3-6 minutes in my oven.
Storage: Store in an airtight container in the fridge for up to one week. I like these best straight out of the fridge.

Nutrition

Serving: 1serving | Calories: 88kcal | Carbohydrates: 13g | Protein: 1g | Fat: 4g | Saturated Fat: 2g | Trans Fat: 1g | Cholesterol: 8mg | Sodium: 28mg | Potassium: 14mg | Fiber: 1g | Sugar: 7g | Vitamin A: 90IU | Vitamin C: 1mg | Calcium: 9mg | Iron: 1mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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