These healthful Gluten-Free Zucchini Muffins are made with natural, nutritious ingredients and no refined sugars. They’re tall, moist, flavorful, and loaded with zucchini!

Add our Healthy Zucchini Bread or Lemon Zucchini Bread to your list for a future baking project.

Gluten free zucchini muffins freshly out of the oven, topped with mini chocolate chips, ready to be enjoyed as a delicious breakfast or snack.

Gluten Free Zucchini Muffins

Several years ago, I created a popular Healthy Zucchini Muffin recipe, but it wasn’t gluten-free. Prompted by a reader’s request, I began developing a gluten-free version. These new muffins omit refined sugar, sweetened instead with mashed banana, maple syrup, and medjool dates. Their primary ingredients are nutritious oats and zucchini.

While chocolate chips aren’t the most nutritious, I prefer dark chocolate for its essential fats. For a completely refined-sugar-free muffin, opt for sugar-free chocolate chips, or substitute them with dried currants or chopped nuts.

Quick Tip

Use a good nonstick muffin tin for easy muffin removal. I can’t say enough good things about this muffin pan; these Gluten-Free Zucchini Muffins always come out perfectly!

Adding oats to a blender, processing to a powder, adding dates, banana, and coconut oil, blending until smooth, transferring to a large bowl, and adding remaining ingredients, stirring until combined.

Ingredients In Gluten Free Zucchini Muffins

  • Old-fashioned Oats: Ground into flour, they form the base of the muffins, providing structure and a hearty texture.
  • Medjool Dates: Chopped and blended, they add natural sweetness and moisture.
  • Coconut Oil: Melted and mixed in, it contributes to the muffins’ moisture and richness.
  • Mashed Banana: Adds sweetness and moisture, enhancing the Gluten Free Zucchini Muffins soft texture.
  • Pure Maple Syrup: Provides additional natural sweetness.
  • Grated Zucchini: Increases moisture content without making the batter overly wet.
  • Eggs: Act as a binding agent, helping to hold the muffins together.
  • Salt, Baking Soda, and Baking Powder: These ingredients work together to season the muffins and help them rise, making them light and fluffy.
  • Cinnamon and Nutmeg: Add warmth and spice for flavor.
  • Pure Vanilla Extract: Enhances the overall flavor of the muffins.
  • Dark and Mini Chocolate Chips: Provide rich, sweet chocolatey pockets in the muffins.

Adding chocolate chips, stirring, filling tins, baking, removing from the oven, and ready to eat.

How To Make Gluten Free Zucchini Muffins

  1. Preheat Oven: Set to 350°F (177°C). Grease a 12-slot muffin tin.
  2. Blend Oats: Process 2 cups old-fashioned oats into a fine powder; transfer to a bowl.
  3. Blend Dates Mixture: Blend pitted medjool dates, melted coconut oil, and mashed banana into a paste; add to the bowl.
  4. Mix Ingredients: Stir in maple syrup, grated zucchini, eggs, salt, baking soda, baking powder, cinnamon, nutmeg, and vanilla. Fold in chocolate chips.
  5. Fill and Top: Divide batter into muffin tin, 3/4 full. Optionally, top with mini chocolate chips.
  6. Bake: For 22-26 minutes until set and lightly browned.
  7. Cool: Let cool in the tin, then transfer to a rack. Enjoy Gluten Free Zucchini Muffins warm.

Gluten free zucchini muffins, with one split open to show the insides revealing the fluffy muffin, zucchini, and melted chocolate chips.

Storage

Storage Tips

Once cooled, store the muffins in an airtight container or resealable bag at room temperature. These muffins are best eaten within 2-3 days. Honestly, we like them the best on day 2; the flavors from the spices have intensified nicely.

To freeze*/thaw:

  1. Cool muffins completely before storing.
  2. To freeze: Wrap Gluten Free Zucchini Muffins individually in plastic wrap and then place all the wrapped muffins in large freezer bags.
  3. To thaw: Set out at room temperature or heat frozen muffins in the microwave.

*There is some loss of texture and flavor when freezing and thawing these muffins.

5 from 13 votes

Healthy Zucchini Muffins

These healthful Gluten-Free Zucchini Muffins are made with natural, nutritious ingredients and no refined sugars. They're tall, moist, flavorful, and loaded with zucchini!
Prep Time: 30 minutes
Cook Time: 23 minutes
Total Time: 53 minutes
Servings: 12 muffins

Ingredients  

  • 2 cups (195g) old-fashioned oats
  • 7-8 whole coarsely chopped fresh medjool dates (remove pits), 3/4 cup (117g)
  • 1/3 cup (67g) melted coconut oil
  • 3 tablespoons mashed banana (~3/4 a large banana)
  • 1/4 cup (85g) pure maple syrup
  • 2 cups (252g) grated zucchini (See Note 1)
  • 2 large eggs
  • 1/4 teaspoon fine sea salt
  • 1 teaspoon baking soda
  • 1/4 teaspoon baking powder
  • 1 teaspoon ground cinnamon
  • 1/4 teaspoon nutmeg
  • 1 and 1/2 teaspoon pure vanilla extract
  • 1/2 cup (93g) dark chocolate chips
  • 1/4 cup (40g) mini chocolate chips

Instructions 

  • PREP: Preheat the oven to 350 degrees F. Generously grease 12 cavities of a muffin tin with nonstick spray (muffin liners won't work well).
  • BLEND OATS: Add 2 leveled cups of oats to a blender or food processor. Blend until the oats resemble flour -- a fine powder. If needed, stir and continue blending to break up larger chunks of oats. Pour powdered oats into a large bowl.
  • BLEND OTHER INGREDIENTS: Remove the pits and coarsely chop up the dates. Measure to get 3/4 cup and then add into the now-empty blender that you used for the oats. Pour the melted coconut oil on top of the dates. Mash a banana to get 3 tablespoons of mashed banana and add that the blender. Blend, scraping down the sides as needed, until you get a thick paste. Scrape all of this paste out of the blender and add to the bowl with the oats.
  • FINISH BATTER: In the same bowl, add the maple syrup, grated zucchini (See Note 1), 2 eggs, salt, baking soda, baking powder, cinnamon, nutmeg, and vanilla extract. Stir with a wooden spoon or electric hand mixer until you have a thick batter (it will seem very dry at first, but keep stirring). Add in the chocolate chips and stir until incorporated. Divide the batter evenly among the prepared muffin tin -- the batter should exactly fill 2 cavities about 3/4 the way full. If desired, sprinkle a few more miniature chocolate chips on top of the muffins.
  • BAKE: Bake for 22-26 minutes or until no longer gooey/wet looking on top and the sides are lightly browned. Remove from the oven and let stand in the pan for 3-4 minutes before gently removing (use the tines of a fork to gently coax out the muffins) and setting on a cooling rack to finish cooling.
  • ENJOY: Enjoy muffins warm; these muffins are even better the second day! Store muffins in an airtight container at room temperature. Best enjoyed within 2-3 days. Freeze leftover muffins.

Video

Recipe Notes

Note 1: Zucchini: Grate the zucchini on the large holes of a grater. If the zucchini is excessively wet, wring it off a few times with paper towel or cheesecloth (I rarely do this unless it's dripping wet).

Nutrition

Calories: 321kcal | Carbohydrates: 42g | Protein: 8g | Fat: 14g | Saturated Fat: 10g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 0.01g | Cholesterol: 32mg | Sodium: 180mg | Potassium: 350mg | Fiber: 5g | Sugar: 12g | Vitamin A: 140IU | Vitamin C: 7mg | Calcium: 80mg | Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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5 from 13 votes (1 rating without comment)

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57 Comments

  1. Gaby says:

    These look great and I can’t wait to try them out! I was wondering if I could substitute the coconut oil with something else though? My boyfriend does not like coconut unfortunately and can pick it up in anything I put it in. Can I use butter or another type of oil such as sunflower? If so, could you please recommend quantities if you know? Thanks!

    1. chelseamessyapron says:

      Hey Gaby, I haven’t tried any other substitutions so I can’t say for sure without further recipe testing. I do think canola oil would be the best substitution.

  2. Lisa says:

    5 stars
    I’ve made these twice now with thawed strawberries and once with thawed blueberries instead of bananas because I had those fruits in the freezer but no bananas on hand and they were so yum

    1. chelseamessyapron says:

      That is so great to hear!! I love to hear how you’ve changed them up with the different fruits ๐Ÿ™‚ Thank you!

  3. Sara says:

    5 stars
    Chelsea oh my gosh these are so good! Just made these with truvia and they are awesome! I love your recipes!

    1. Tatjana says:

      Hello, could I substitute eggs with flax eggs? I canโ€™t eat eggs, but these look amazing

      1. Chelsea Lords says:

        Iโ€™m sorry, I have very little experience with flax eggs and havenโ€™t tested this recipe with them so I really have no idea. Wish I could be of more help!

      2. Erin says:

        I’m making these with applesauce instead of oil and chia eggs instead of the eggs. I sub these all the time in muffin recipes with success. 1 Tbsp Chia seeds plus 2.5 Tbsp water for each egg. I premix the code and eggs just like the flax egg, letting them sit while I prepare the other ingredients. Thanks for the yummy recipe Chelsea!

        1. Chelsea Lords says:

          You bet! Thanks for the comment Erin!

  4. Lori says:

    Can you use applesauce instead of bananas in this recipe?

    1. chelseamessyapron says:

      I haven’t tried it, but I don’t see why it wouldn’t work ๐Ÿ™‚

  5. Emily O'Connor says:

    5 stars
    SO moist and delicious! Thanks for sharing! ๐Ÿ™‚

    1. chelseamessyapron says:

      So glad to hear you enjoyed these!! Thanks for the comment ๐Ÿ™‚

  6. Shannon says:

    I love using oat flour for muffins. It gives the best texture. These look amazing!

  7. chelseamessyapron says:

    Thanks so much!! I don’t mind the moisture in these muffins and didn’t pat the zucchini dry, but I definitely don’t think that it would hurt to pat them dry especially if you don’t prefer moist muffins. ๐Ÿ™‚

  8. Ana | Espresso My Kitchen says:

    Chelsea, these look YUMMY and love that they are healthier! I love baking with oats, coconut oil and of course dark chocolate. Need to try these! Pinned.

    1. Amy says:

      Hi Chelsea, I love your recipes! My husband is not a fan of chocolate chips in muffins. Will they still be good if I leave the chocolate chips out?

      1. Chelsea says:

        Thanks so much Amy! ๐Ÿ™‚ These are great with or without the chocolate chips! ๐Ÿ™‚

  9. Sam says:

    These look awesome Chelsea! There’s no such thing as too many zucchini recipes, if you ask me! ๐Ÿ™‚

  10. Ashley says:

    I just love baked goods with zucchini! These muffins look fantastic Chelsea!