Apple Muffins are soft and moist, perfectly spiced, and topped with an easy crumb topping.

These muffins are made with better-for-you ingredients — apples, Greek yogurt, coconut oil, and an egg. We leave out the butter and excessive amounts of sugar found in typical bakery-style muffins and you won’t miss either!

Freshly baked apple muffins, warm and delicious, with chunks of fresh apples and the complimentary taste of cinnamon.

The Best Apple Muffins

We often go apple picking in the fall and end up with so many apples that I’m always asking myself what to do with them all. My first move is making a couple batches of these apple muffins of course!

Apple Muffins are made to imitate a bakery-style muffin, but in a healthier way. They’ve got the taste, moisture, and texture of your typical bakery muffin but with superior ingredients. Below I break down all the ingredients in these muffins.

Mixing wet and dry ingredients to create the perfect batter for the recipe.

Ingredients For Apple Muffins

  • White whole wheat flour or plain white flour: Use plain white for regular muffins, or white whole wheat for added nutrition. Avoid whole wheat flour; it makes the muffins dense.
  • Cornstarch: This gives the muffins a soft texture, mimicking cake flour.
  • Baking powder: Essential for making the batter rise.
  • Spices: These muffins contain subtle amounts of cinnamon, nutmeg, and allspice. Adjust to taste or add apple pie spice.
  • Salt: Use fine sea salt for flavor balance.
  • Large egg
  • Vanilla Greek yogurt: Opt for full-fat, flavorful Greek yogurt. I prefer Greek God’s® Honey Vanilla for Apple Muffins.
  • Coconut oil: A healthier oil with a faint flavor.
  • Vanilla extract: Enhances flavor.
  • Apple and lemon juice: Use finely diced, peeled Granny Smith apples. Lemon juice adds zest and prevents apple browning.
  • Brown sugar: Use in moderation for flavor. Opt for light brown sugar; dark makes the muffins overly moist.

Quick Tip

Which apples are best for baking? For baking, choose apples that retain structure to avoid mushiness. Granny Smith is ideal for its sweet-tart balance. Other good options include Honeycrisp, Jonagold, Braeburn, and Pink Lady.

How To Make Apple Muffins

  1. Prep: Preheat oven to 350°F. Grease/flour 8 muffin cavities. No liners.
  2. Dry Mix: Combine flour, cornstarch, baking powder, salt, cinnamon, nutmeg, and allspice.
  3. Wet Mix: Whisk egg, yogurt, coconut oil, vanilla, and brown sugar.
  4. Apple: Mix diced apple with lemon juice; add to dry ingredients.
  5. Combine & Fill: Mix wet into dry. Fill muffin cavities 3/4 full. Add water to empty spots.
  6. Topping: Mix topping ingredients; sprinkle on apple muffins.
  7. Bake: 20-25 mins or until clean toothpick. Cool 5 mins, then on rack.
  8. Store: Refrigerate up to 3 days. Warm as preferred.

Creating the delicious crisp topping for breakfast using oats and brown sugar.

Tips For Success

  • Spoon and level the flour to ensure moist, soft muffins.
  • Measure ingredients accurately; a food scale is ideal. Here’s the one I use.
  • Avoid over-mixing the batter to prevent muffins from sinking in the center.
  • Use finely chopped apples, not grated, to prevent excess moisture.

The finished apple cinnamon muffins, warm and aromatic, a perfect sweet and healthy breakfast.

More Apple Recipes

4.90 from 29 votes

Apple Muffins

These crumb topped Apple Muffins are soft, spiced, and delicious.
Prep Time: 15 minutes
Cook Time: 20 minutes
Total Time: 35 minutes
Servings: 10 muffins

Equipment

  • Muffin pan

Ingredients 
 

Muffins

  • Cooking spray
  • 1 cup flour or whole wheat flour
  • 1 tablespoon cornstarch
  • 1-1/2 teaspoons baking powder
  • 1/2 teaspoon salt
  • 1/2 teaspoon ground cinnamon
  • 1/4 teaspoon EACH: ground nutmeg see note 1
  • 1/4 teaspoon ground allspice
  • 1 large egg
  • 1/2 cup honey vanilla Greek yogurt
  • 1/4 cup coconut oil melted, see note 2
  • 1/2 teaspoon vanilla extract
  • 1/2 cup light brown sugar lightly packed
  • 1 cup peeled & finely diced apple
  • 1/2 teaspoon lemon juice

Cinnamon Sugar Topping

  • 3 tablespoons flour or whole wheat flour
  • 2 tablespoons quick oats
  • 1/2 teaspoon ground cinnamon
  • 3 tablespoons brown sugar not packed
  • 2 tablespoons melted coconut oil see note 2

Instructions 

  • Preheat oven to 350ยฐF (175ยฐC). Generously coat aย Muffin panย with cooking spray. Measure and set out your egg and yogurt to reach room temperature. Melt coconut oil, measure and set aside to reach room temperature.
  • In a large bowl, add the muffin dry ingredientsโ€”flour (use a food scale if you have itโ€”135g), cornstarch, baking powder, salt, cinnamon, nutmeg, and allspice. Mix until combined.
  • In a separate bowl, whisk together the muffin wet ingredientsโ€”egg, Greek yogurt, melted coconut oil (see note 2), vanilla extract, and brown sugar. Whisk together until smooth.
  • Peel and very finely chop the apple. Toss with the lemon juice. Add to the dry ingredients and stir until the apple pieces are coated in flour.
  • Add dry ingredients on top of wet. Mix with a spatula until ingredients are combined and no dry streaks of flour remain.
  • Use a 1/4 cup measuring cup to scoop the batter into each of the sprayed muffin cups. There should be enough batter for about 10 muffins.
  • In another bowl, toss together the Cinnamon Sugar Topping dry ingredientsโ€”flour, quick oats, cinnamon, and brown sugar. Pour in the coconut oil and mix to combine, crumble with your fingertips if needed. If the mixture is too wet, add flour, if it's too dry, add coconut oil. Sprinkle this topping evenly on top of each muffin. Don't press the topping into the muffin.
  • Bake for 20โ€“25 minutes or until a toothpick when inserted in the center of the muffin comes out clean. Remove the pan from oven and allow to cool for 5 minutes before taking the muffins from the tin. Use a spoon or butterknife to trace around the edges and coax the muffins out. Allow muffins to finish cooling on a cooling rack so the bottoms don't get soggy as they cool. Enjoy warm!

Recipe Notes

Note 1: Feel free to increase the spices if desired. As written, the spices yield a very subtle flavor.
Note 2: Measure the coconut oil in its melted form. Do not add hot or warm coconut oil to the wet ingredients; wait until it's a room temperature so it doesn't clump.
Note 3: I love to use Granny Smith or Honey Crisp!
Storage: Store completely cooled muffins in an airtight container in the fridge. Warm in the microwave for 10โ€“15 seconds before serving. Muffins are best enjoyed within 2โ€“3 days.
ย 

Nutrition

Serving: 1serving | Calories: 257kcal | Carbohydrates: 36.3g | Protein: 3.4g | Fat: 11g | Cholesterol: 23.7mg | Sodium: 21.2mg | Fiber: 1g | Sugar: 18.1g

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelseaโ€™s Messy Apron! Iโ€™m Chelsea, the recipe developer, food photographer, and writer behind the site. Iโ€™m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping byโ€”I hope you find something delicious to make!

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4.90 from 29 votes (6 ratings without comment)

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75 Comments

  1. Katalina says:

    Perfect to start the fall season, I would enjoy these gladly for breakfast with some warm cider on the side!

  2. Taylor says:

    I am SO READY for fall! I’ve already been baking all the apple and pumpkin things… I AM SO PUMPED.
    These muffins look majorly delish, and I LOVE that you used Greek yogurt! Pinned!

  3. Medha says:

    September is almost here, and that totally means ALLL the apple things- can’t wait ๐Ÿ™‚

  4. Michele says:

    oh my gosh! apple muffins sound good enough but that crumbly topping I mean drooling over it! toppings alwaysss get me! ๐Ÿ˜‰ this looks delicious Chelsea!

  5. Kelly says:

    As much as I will miss all the summer berries, fall is my favorite baking season too ๐Ÿ™‚ I love these apple muffins, Chelsea! They’re gorgeous and I’m swooning over the cinnamon sugar topping!

  6. Erin says:

    Mmmm I am excited for apple season! Love that you used Greek yogurt in these beauties.

    1. chelseamessyapron says:

      Thanks Erin! ๐Ÿ™‚

  7. Beverley @ sweaty&fit says:

    On my way to go buy corn starch right MEOWWWW!! Thanks for sharing your secrets. That sugar topping looks amazing

  8. Sam says:

    5 stars
    These muffins look incredible, and I love that you used cornstarch, it’s definitely a great secret ingredient for softness, I feel like I use it in everything now! ๐Ÿ™‚

    1. chelseamessyapron says:

      Thank you Sam!!

  9. Gayle @ Pumpkin 'N Spice says:

    I’m so ready for fall too, but I’m not ready for what comes after that! ๐Ÿ™‚ These muffins look fantastic, Chelsea! I love that there is no butter in the topping and that they’re made with Greek yogurt. Yum!

  10. Rachel says:

    I love fall but I’m not so sure I’m ready for summer to be over. I’ll compromise by enjoy the last week of my daughter’s summer vacation while eating these dreamy muffins. ๐Ÿ™‚

    1. chelseamessyapron says:

      Hahaha!! That sounds perfect!!