This Jalapeño Mac and Cheese is a must-try! Cheesy, slightly spicy pasta with jalapeños, bacon, and a crispy buttery topping baked to perfection!

Add this original Baked Mac And Cheese to your list of recipes to try next!

Overhead image of the Jalapeño Popper Mac & Cheese

Best Jalapeño Mac and Cheese

This 3-cheese Jalapeño Mac and Cheese is rich, creamy, and packed with bacon, jalapeños, and a crispy, buttery Panko topping.

I’m a huge fan of mac and cheese, but when it’s loaded with this much flavor and baked to gooey perfection, it’s truly next-level!

Inspired by my favorite jalapeño poppers, this recipe combines sharp Cheddar, cream cheese, and pepper-Jack for the ultimate cheese sauce.

Process shots-- images of the bacon being cooked, jalapeño, garlic, seasonings, and butter being added and all sautéed together

Ingredients

  • Pasta: Cook slightly underdone to avoid overcooking during baking.
  • Butter: Stir into warm pasta for even coating.
  • Bacon: Use extra grease to cook the jalapeños.
  • Jalapeño Pepper: Remove seeds and ribs for mild spice.
  • Garlic: Adds aromatic flavor. Sauté briefly for sweetness.
  • Seasonings: Cooking them with jalapeños bring out the flavor.
  • Flour: Whisk constantly to avoid lumps.
  • Milk: Whole milk or evaporated milk work.
  • Cream Cheese: Soften before mixing for smooth blending.
  • Cheddar & Pepper-Jack Cheese: Always freshly grate for smooth melting.
  • Panko Topping: Mix Panko with butter for a crispy, golden finish.

Quick Tip

You can easily adjust spice levels! Use less jalapeño or swap Pepper-Jack for Monterey Jack or mozzarella cheese. For more heat, add extra jalapeño or a pinch of cayenne to the sauce.

Process shots of the jalapeño Mac and cheese-- images of the flour, milk, and cream cheese being added and all mixed together

How To Make Jalapeño Mac and Cheese

  1. Cook Pasta: Boil until slightly firm, drain, and mix with butter.
  2. Cook Bacon: Fry bacon until crispy, set aside, and keep 1 spoon of grease.
  3. Jalapeños: Sauté jalapeños and garlic in the bacon grease with spices.
  4. Make Sauce: Melt butter, mix in flour, milk, and stir in cream cheese and shredded cheese until smooth.
  5. Combine: Stir pasta, bacon, and sauce together.
  6. Add Topping: Toast breadcrumbs in butter and sprinkle on top.
  7. Bake: Put in a dish, bake until bubbly and golden, then serve.
Process shots-- images of the cheese, cooked pasta, and bacon being added to the sauce

Jalapeño Popper Mac and Cheese Tips

  • Add a small bit of butter or oil to drained pasta to stop it from clumping or the sauce from splitting, especially in baked mac and cheese.
  • Thicken the sauce: After adding milk to the butter and flour mix, cook until it sticks lightly to the spoon. Run your finger through it—if the line stays, it’s ready; if not, cook a little longer.
  • Don’t over-bake: Baking too long dries out the pasta and sauce.
Process shots of the jalapeño Mac and cheese-- images of the pasta all being transferred to a baking dish
Process shots-- images of the Panko topping being prepped and added to the dish

Storage

Jalapeño Popper Mac and Cheese Storage

  • Do not assemble ahead of time. Once the pasta is combined with the cheese sauce, the pasta will seep up the sauce and bloat– which we don’t want.
  • To prepare ahead of time: Prepare the sauce but don’t add it to the pasta. Refrigerate the two separately and then when ready to assemble, warm the sauce gently over low heat (add a splash of milk if needed to thin) and then toss the two together and bake from there.
  • Store leftovers in an air-tight container.
  • Reheat by placing mac and cheese in a baking dish and cover with foil. Bake for about 15-20 minutes at 375 degrees F or until warmed through. The topping will be soft and pasta a bit bloated, but still cheesy, gooey, and delicious!
  • Mac and cheese is not a great candidate for freezing and thawing — the cheese sauce will likely break and the pasta will become bloated and mushy.

Up close overhead image of the Jalapeño Mac and Cheese freshly baked

More Pasta Dishes

5 from 4 votes

Jalapeño Popper Mac and Cheese

This Jalapeño Popper Mac and Cheese is a must-try! Ultra cheesy, slightly spicy pasta with jalapeños and bacon, topped with a crispy buttery layer and baked to perfection.
Prep Time: 30 minutes
Cook Time: 25 minutes
Total Time: 55 minutes
Servings: 4 servings

Equipment

  • Large, heavy-bottomed pot
  • Baking pan 9 x 9-inch

Ingredients 
 

Pasta

  • 3 packed cups cavatappi pasta see note 1
  • 1 tablespoon unsalted butter

Sauce

  • 4 slices thick-sliced bacon or 8 regular slices, diced
  • 3 to 6 tablespoons finely minced jalapeño pepper see note 2
  • 1 tablespoon minced garlic 3 cloves
  • 1 teaspoon garlic powder
  • 1 teaspoon onion powder
  • 1/2 teaspoon paprika
  • 4 tablespoons unsalted butter
  • 1/3 cup flour
  • 2 (12-ounce) cans evaporated milk or 3 cups whole milk
  • 4 ounces cream cheese full-fat, brick-style
  • 2 cups freshly shredded Cheddar cheese sharp or extra-sharp, see note 3
  • 1 cup freshly shredded pepper-Jack cheese
  • Salt and pepper

Panko Topping

  • 2/3 cup panko breadcrumbs see note 4
  • 2 tablespoons unsalted butter melted
  • 1 jalapeño optional, for topping

Instructions 

  • Bring a large pot of water to boil. Once boiling, generously salt the water and return to a boil. Add pasta and cook according to package directions, subtracting 1 minute. Drain, shake off excess water, and immediately add pasta back to pot. Add butter and gently stir until butter is melted. Set aside to cool while making sauce. Preheat oven to 350°F.
  • Meanwhile, dice the bacon and cook over medium-high heat in a large, heavy-bottom pot (we’ll use this pot to make the cheese sauce) until golden and cooked to desired preference. Use a slotted spoon to remove the bacon onto a paper-towel-lined plate. Drain all but 1 tablespoon of the grease.
  • Reduce heat to medium and add in diced jalapeños. Sauté for 1–2 minutes and add garlic, paprika, garlic powder, and onion powder. Season to taste with salt and pepper; I add 1 teaspoon salt and 1/2 teaspoon pepper. Sauté for 30 seconds or until fragrant. Add butter, and once melted, add flour. Whisk constantly, cooking for 1 minute. While whisking, slowly pour in evaporated milk. Add very gradually so it can thicken. Cook for 5–7 minutes or until thickened properly (see note 5).
  • While sauce is thickening, add unwrapped cream cheese to the microwave. Microwave for 10 seconds, flip, and microwave for another 10 seconds. Flip and microwave once more or until very soft.
  • Add cream cheese to the sauce and briskly whisk until completely integrated and smooth. Remove pot from heat and add in Cheddar and pepper-Jack. Stir until smooth (it’s okay if it isn’t fully melted—we’re baking it!).
  • Optional: Meanwhile, melt butter over medium heat in a medium pan. Add panko and salt to taste (I add 1/4 teaspoon) and stir to coat. Continue cooking until crumbs become golden brown. Remove from heat and set aside.
  • Pour the sauce, scraping every bit of it over cooked pasta (it may seem super saucy, but this will keep it from becoming dry after baking!). Add in reserved bacon. Give everything a quick stir and a taste test—add more salt/pepper if needed. Transfer mixture to a lightly greased 9×9-inch pan. Sprinkle panko topping evenly over pasta, and if desired, add a thinly sliced jalapeño on top. Bake for 10–15 minutes or until slightly thickened at the edges and light golden brown on top (don’t bake too long or the cheese sauce will dry out!). Remove and serve immediately! Enjoy!

Recipe Notes

Note 1: If you don’t have access to cavatappi pasta, you can try another pasta like rotini or macaroni. Use 8 ounces.
Note 2: Remove Jalapeño ribs and seeds (or leave them in for lots of heat). Add as much or as little as you’d like. When making for my kids, I use 3 tablespoons of very finely diced jalapeño. They can handle a bit of spice, but I’d say that is fairly mild. To increase spice, add more jalapeño and even a touch of cayenne pepper. To reduce spice as much as possible, use less jalapeño and replace pepper-Jack with Monterey Jack or mozzarella cheese.
Note 3: White sharp or yellow sharp Cheddar—either works and they’ll taste the same. For a more Cheddar-y mac and cheese, use Tillamook’s extra-sharp Cheddar. Whatever you use, freshly shred it! Pre-shredded cheese has a cellulose coating that doesn’t melt as well in recipes like this one. To avoid a greasy mac and cheese, take the time to grate your own (or use a food processor with a cheese-grating attachment to do this quickly).
Note 4: Panko breadcrumbs are similar to regular breadcrumbs, but they create a much crunchier result. They can typically be found near other breadcrumbs or in the Asian food aisle in the grocery store.
Note 5: How to know when cheese sauce is thick enough: The sauce should be thick enough to coat the back of a wooden spoon. Stir the sauce, lift the spoon, and immediately trace a line across the back of the spoon with your fingertip. If the line retains a clear track, the sauce is thick enough. If not, the sauce needs to be cooked a bit longer.
Storage: Store leftovers in and airtight container in the fridge, though this dish is best enjoyed immediately. Mac and cheese is not a great candidate for freezing.

Nutrition

Serving: 1serving | Calories: 1072kcal | Carbohydrates: 37g | Protein: 42g | Fat: 85g | Saturated Fat: 48g | Polyunsaturated Fat: 5g | Monounsaturated Fat: 26g | Trans Fat: 1g | Cholesterol: 241mg | Sodium: 1089mg | Potassium: 780mg | Fiber: 1g | Sugar: 20g | Vitamin A: 2337IU | Vitamin C: 18mg | Calcium: 1123mg | Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

Meet Chelsea


Hello, and welcome to Chelsea’s Messy Apron! I’m Chelsea, the recipe developer, food photographer, and writer behind the site. I’m passionate about creating simple, reliable, and delicious recipes that anyone can make.

Thanks for stopping by—I hope you find something delicious to make!

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5 from 4 votes (2 ratings without comment)

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4 Comments

  1. Bryan says:

    5 stars
    WOWZA! Super easy, and super yum!

    1. Chelsea says:

      Thanks Bryan! 🙂

  2. Ozzie Castro says:

    5 stars
    LOVE LOVE LOVED this mac and cheese!!!

    1. Chelsea says:

      Yay! So happy to hear this! Thanks Ozzie! 🙂